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Lyon International Airport - Saint-Exupéry
Saint-Exupéry Airport is 45 minutes from Bourg-en-Bresse by motorway.
Saint-Exupéry Airport website 
Shuttle buses travel to/from Bourg-en-Bresse and Saint-Exupéry Airport
Balad'Ain transport website
Geneva International Airport - Cointrin
Geneva airport is 55 minutes away by motorway or 1 hour 45 minutes away by TGV.
Geneva – Cointrin Airport website